Now it gets complicated.
You need to pull all the shims that aren't in spec, keeping track of where they came from. Then measure them with a micrometer and calculate what thickness you actually needed in each spot.
Then check to see if you can swap shims around to get most of them in spec.
Then either get your remaining shims ground down to fit at a local machine shop, or buy new ones if they need to be thicker.
Best place to get these for cheap is your local Yamaha dealer, same shims as they used in a motorcycle engine back in the day... damnifiremember what motorcycle engine, though. Some searching might turn that little tidbit up.