No worries socalguy, I was not talking about you. Doing a straight comparison between a single vs. twin is going to be VERY difficult because of the number of factors involved.
When comparing ultimate power it's really determined by two things (if we assume the same 2JZ engine at a given speed): 1) Boost & 2) VE.
If we assume, as we should, that you are operating at a fixed boost level, then VE is all we care about. Since we are talking about a given engine, we don't need to worry about head design, cams, intercooler, etc. It comes down to engine delta P. A single GT4088R can flow ~70lb/min. A single GT28RS can flow ~35lb/min. So, using two of them should provide the same potential. Meaning, the compressor(s) can provide the same maximum amount of flow.
So, everything else being equal, both setups would make the same power. This brings us back to the VE stuff I was talking about. The twins will require more energy because they are less efficient. This will raise the backpressure on the engine and hurt VE. So, you wont make as much power and you will make it later.
Below is a ROUGH match I did. You can see that the twins spool later because of the lower efficiency. I assumed the same VE for both cases (and BSFC) so that is why the power number are line for line in the upper rpm. The max boost line on the twins is lower because the compressor map I was using didn't go to the higher pressure ratios so I kept the boost down. As I said, this is rough. I don't think you'll find a GT4088R that spools that quickly in reality which probably means some of my VE assumptions were a little....optimistic.
Daniel