If I was being picky and sticking with Std size bearings, here's what I'd do:
If you see no damage to the crank/bearings, take the crank out, send it to be polished.
Once you get the crank back, mic the crank journals as well as all the rods and the block. Confirm that your measurements match the bearing size that was in each spot. If there are any that are now out of spec, make that correction. Order all the bearings according to your findings from Toyota. Plastigage everything, confirm that your clearances are now correct.
If you see any damage on the crank, you'll want to know if it can be polished and still be within Std spec before doing anything else.
Hopefully after all of this, you now have perfect clearances with Std size bearings.
Basically... follow the TSRM. If you are willing to accept a slightly wider range of tolerances than the very specific Std ones, you can get aftermarket Std bearings, if you have any that are too tight, you can correct that. If you happen to be too loose on any, you may have to get Toyota ones anyways, provided that a Toyota Std bearing 5 would make up for it, chances are it wouldn't and you'd need to go U/S anyways.
From what I've seen, chances are, if there was no damage to anything, and it looks good in there, you'll probably end up putting the exact same size bearings in that you just took out. If there is any scuffing/marks on the crank, you may need to move up a size or two if polishing can take care of it.
Basically... follow the TSRM, it's all in there. Good luck.
Jeff