I believe I read on club3g.com (I also own a 3g Eclipse GT) that a mustang dyno reflects more towards real world driving conditions where they take into account that no Piece of information used when tuning your car is going to be "perfect" like a dyno jet does. That being said, a mustang dyno gives you power gains when tuned that will work better for you when driving around on the road (they base their tuning on the fact that no outside forces, like temperature and such, are going to be same all the time). A dyno jet tunes for that "perfect" condtion (perfect air temp, a/f ratio, etc.) and i believe that is why the dyno jet shows you making more horsepower. They base the tune on if every variable were perfect, whereas the mustang dyno tunes on real world condition.
Someone correct me if i'm wrong.